As A Freelancer, Do I Pay More Taxes If I Do Work Under My Company Or Do I Pay More If I Do Work Under My Na?

I work as a freelancer and I have done contracts through my company where I got hired with a 1099 MISC; I ended up paying almost 20% of the income I made in taxation for each business I got contracted through my company. Would I have paid less taxes if I didn’t have a 1099MISC meaning if I had gotten cash?